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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1668KEGG: dsy:DSY3403 HD-GYP domain protein. (90 aa)    
Predicted Functional Partners:
Swol_2130
KEGG: mag:amb0553 response regulator.
 
    0.781
Swol_1041
KEGG: gsu:GSU1891 response regulator.
 
    0.778
Swol_2424
HD-GYP domain-like protein; KEGG: gsu:GSU1007 GAF domain/HD domain protein.
 
   
 0.777
Swol_1894
KEGG: cac:CAC0475 HD-GYP domain.
  
     0.772
Swol_1502
KEGG: mta:Moth_2263 metal dependent phosphohydrolase.
  
     0.771
Swol_2150
KEGG: mta:Moth_2263 metal dependent phosphohydrolase.
  
     0.771
Swol_0647
KEGG: cac:CAC3650 HD-GYP domain containing protein.
  
     0.770
Swol_1504
KEGG: mta:Moth_2263 metal dependent phosphohydrolase.
  
     0.770
Swol_2407
KEGG: chy:CHY_1905 HD domain protein.
  
     0.770
Swol_0337
KEGG: tdn:Tmden_0930 metal dependent phosphohydrolase.
  
     0.643
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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