STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1676KEGG: mta:Moth_1424 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (349 aa)    
Predicted Functional Partners:
Swol_1472
KEGG: mac:MA1233 iron(III) ABC transporter, ATP-binding protein.
 
 
 0.967
Swol_1694
KEGG: mta:Moth_1423 ABC transporter related.
 
 
 0.967
Swol_1675
KEGG: mba:Mbar_A2260 hypothetical protein.
 
 
 0.944
Swol_1673
KEGG: cac:CAC1988 ferrichrome-binding periplasmic protein.
 
 
 0.933
Swol_1679
KEGG: nwi:Nwi_2073 periplasmic binding protein.
 
 
 0.930
Swol_1187
KEGG: mac:MA1222 iron(III) ABC transporter, solute-binding protein.
 
 
 0.910
Swol_1691
KEGG: nha:Nham_0956 periplasmic binding protein.
 
 
 0.910
Swol_2486
KEGG: cac:CAC1988 ferrichrome-binding periplasmic protein.
 
 
 0.910
Swol_2097
KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
 0.909
Swol_1687
KEGG: mta:Moth_1419 periplasmic binding protein.
 
 
 0.908
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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