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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1680KEGG: det:DET1059 sensor histidine kinase. (465 aa)    
Predicted Functional Partners:
Swol_1681
KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
 
 0.944
Swol_0951
KEGG: chy:CHY_2047 DNA-binding response regulator.
 
 0.877
Swol_2441
KEGG: tma:TM1655 response regulator DrrA.
 
 
 0.869
Swol_2177
Response regulator receiver protein; KEGG: dsy:DSY1212 hypothetical protein.
 
 0.858
Swol_1456
KEGG: dde:Dde_1576 response regulator receiver domain protein (CheY-like).
 
 
 0.856
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
 
 
0.832
Swol_2412
Response regulator receiver protein; KEGG: dsy:DSY4941 hypothetical protein.
  
     0.757
Swol_0355
KEGG: pab:PAB1330 chemotaxis response regulator.
 
   
 0.741
Swol_1328
PAS/PAC sensor hybrid histidine kinase; KEGG: dsy:DSY3378 hypothetical protein.
 
 
0.740
Swol_0381
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator.
 
 
0.730
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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