Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1696KEGG: sth:STH2580 hypothetical protein. (497 aa)    
Predicted Functional Partners:
Swol_1798
KEGG: mta:Moth_2145 hypothetical protein.
  
     0.726
Swol_0123
KEGG: mta:Moth_0215 polysaccharide pyruvyl transferase.
 
     0.715
Swol_2286
Hypothetical protein; KEGG: mta:Moth_0517 N-acetylmuramoyl-L-alanine amidase.
  
     0.693
Swol_1991
KEGG: mta:Moth_0243 hypothetical protein.
  
     0.645
Swol_1963
KEGG: mta:Moth_2145 hypothetical protein.
  
     0.568
Swol_0141
Hypothetical protein; KEGG: mta:Moth_1459 Ig-like, group 2.
  
     0.554
Swol_0133
Hypothetical protein; KEGG: mta:Moth_2343 copper amine oxidase-like.
  
     0.539
Swol_1184
KEGG: mta:Moth_0243 hypothetical protein.
 
     0.508
Swol_1447
KEGG: bga:BG0694 chemotaxis operon protein.
  
     0.480
Swol_0317
KEGG: mta:Moth_0243 hypothetical protein.
  
     0.467
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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