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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1697KEGG: mta:Moth_2419 copper ion-binding. (69 aa)    
Predicted Functional Partners:
Swol_1698
KEGG: tte:TTE2463 cation transport ATPases.
 
 
0.942
Swol_2086
KEGG: gka:GK0352 cadmium-transporting ATPase.
 
 
 0.890
Swol_0429
Transcriptional repressor, CopY family; KEGG: dsy:DSY1088 hypothetical protein.
  
  
 0.716
Swol_0461
KEGG: dsy:DSY2430 hypothetical protein.
  
  
 0.710
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.674
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.573
Swol_1696
KEGG: sth:STH2580 hypothetical protein.
       0.437
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.431
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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