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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1708KEGG: dsy:DSY4201 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Swol_1707
KEGG: chy:CHY_0791 molybdopterin converting factor, subunit 1.
       0.542
Swol_2165
KEGG: tte:TTE0834 hypothetical protein.
  
     0.504
Swol_0320
KEGG: dsy:DSY2102 hypothetical protein.
  
     0.473
Swol_0447
KEGG: chy:CHY_0305 putative germination protein GerM.
 
     0.472
Swol_0872
KEGG: dsy:DSY2971 hypothetical protein.
  
     0.467
Swol_1710
Hydrolase (metallo-beta-lactamase superfamily)-like protein; KEGG: mta:Moth_1254 beta-lactamase-like.
 
     0.451
Swol_1192
KEGG: dsy:DSY4478 hypothetical protein.
  
    0.436
Swol_1706
KEGG: pca:Pcar_0252 ThiF protein, putative.
       0.430
Swol_2378
KEGG: tte:TTE0157 hypothetical protein.
  
     0.421
Swol_1709
KEGG: mta:Moth_2231 RNA-directed DNA polymerase (reverse transcriptase).
       0.401
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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