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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1712KEGG: tte:TTE0740 capsular polysaccharide biosynthesis. (435 aa)    
Predicted Functional Partners:
Swol_0127
Hypothetical protein; KEGG: mta:Moth_1253 O-antigen polymerase.
 
   
 0.653
Swol_1843
Hypothetical protein.
  
     0.624
Swol_1260
Hypothetical protein; KEGG: btk:BT9727_0789 possible S-layer protein.
 
     0.598
Swol_0732
KEGG: dde:Dde_2846 hypothetical protein.
 
     0.590
Swol_2188
Hypothetical protein.
  
     0.586
Swol_2497
KEGG: syf:Synpcc7942_0443 hypothetical protein.
 
     0.584
Swol_2160
KEGG: cac:CAC2592 6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein.
  
     0.583
Swol_0755
KEGG: dsy:DSY3327 hypothetical protein.
 
     0.566
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
 
  
 0.562
Swol_1961
Hypothetical protein.
  
     0.557
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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