STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1719KEGG: rba:RB7500 methanol dehydrogenase regulator (MoxR) homolog. (324 aa)    
Predicted Functional Partners:
Swol_1718
KEGG: rba:RB9424 hypothetical protein.
 
  
 0.873
Swol_1720
Hypothetical protein.
 
    0.740
Swol_1716
KEGG: rba:RB7503 conserved hypothetical protein-putative chloride channel.
 
    0.736
Swol_1717
KEGG: rba:RB7502 hypothetical protein.
 
  
 0.733
Swol_1722
KEGG: sth:STH2107 hypothetical protein.
 
    0.667
Swol_1723
KEGG: sth:STH2108 ABC transporter ATP-binding protein.
 
  
 0.644
Swol_1724
KEGG: sth:STH2109 hypothetical protein.
 
    0.634
Swol_1721
Hypothetical protein; KEGG: ctc:CTC00761 membrane-associated protein.
 
     0.550
Swol_0039
KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
   
 
 0.507
Swol_1357
Arginine decarboxylase; KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
   
 
 0.507
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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