Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1722KEGG: sth:STH2107 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Swol_1723
KEGG: sth:STH2108 ABC transporter ATP-binding protein.
 
 
 0.979
Swol_1724
KEGG: sth:STH2109 hypothetical protein.
 
    0.957
Swol_1721
Hypothetical protein; KEGG: ctc:CTC00761 membrane-associated protein.
 
     0.931
Swol_1720
Hypothetical protein.
 
     0.864
Swol_1716
KEGG: rba:RB7503 conserved hypothetical protein-putative chloride channel.
 
     0.835
Swol_1717
KEGG: rba:RB7502 hypothetical protein.
 
     0.813
Swol_1725
Hypothetical protein.
       0.782
Swol_1718
KEGG: rba:RB9424 hypothetical protein.
 
     0.774
Swol_1719
KEGG: rba:RB7500 methanol dehydrogenase regulator (MoxR) homolog.
 
  
 0.675
Swol_0180
KEGG: mta:Moth_2329 ABC transporter related.
  
 
 0.631
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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