Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_1833KEGG: pab:PAB1931 NADH oxidase. (412 aa)    
Predicted Functional Partners:
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
 
 
0.968
Swol_0786
KEGG: sth:STH3295 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.912
Swol_1834
KEGG: mta:Moth_0721 4Fe-4S ferredoxin, iron-sulfur binding.
   
 
 0.908
Swol_1830
KEGG: dsy:DSY3968 putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.907
Swol_1028
KEGG: dsy:DSY3968 putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.906
Swol_2425
KEGG: dsy:DSY0802 hypothetical protein.
 
      0.899
Swol_1835
KEGG: chy:CHY_1712 aldehyde ferredoxin oxidoreductase, tungsten-containing.
 
   0.881
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
 
  
 0.778
Swol_1832
KEGG: mag:amb2921 Fe-S-cluster-containing hydrogenase components 2.
  
  
 0.776
Swol_0687
uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; KEGG: dsy:DSY2224 hypothetical protein.
  
  
 0.724
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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