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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1887KEGG: mta:Moth_0124 SirA-like; Belongs to the sulfur carrier protein TusA family. (195 aa)    
Predicted Functional Partners:
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.841
Swol_2089
KEGG: mta:Moth_1442 hypothetical protein.
 
  
 0.783
Swol_2560
KEGG: chy:CHY_1802 selenocysteine-specific translation elongation factor.
 
   
 0.732
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.710
Swol_1912
KEGG: tte:TTE2789 selenocysteine lyase.
 
 
 
 0.696
Swol_0410
KEGG: gsu:GSU2519 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative.
 
    0.681
Swol_0427
KEGG: tde:TDE0392 (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative.
 
    0.681
Swol_0412
KEGG: tde:TDE0389 (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative.
 
    0.661
Swol_0518
KEGG: tde:TDE0239 glycine reductase complex protein GrdD.
  
     0.581
Swol_1888
ErfK/YbiS/YcfS/YnhG; KEGG: mta:Moth_0101 ErfK/YbiS/YcfS/YnhG.
       0.497
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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