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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1894KEGG: cac:CAC0475 HD-GYP domain. (352 aa)    
Predicted Functional Partners:
Swol_0336
KEGG: gme:Gmet_2629 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.809
Swol_1668
KEGG: dsy:DSY3403 HD-GYP domain protein.
  
     0.772
Swol_2092
Response regulator receiver protein; KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor.
 
 
 0.741
Swol_1622
Response regulator receiver protein; KEGG: lic:LIC20183 histidine kinase sensor protein.
 
 
 0.587
Swol_2435
PAS/PAC domain-like protein; KEGG: sth:STH3300 two-component sensor histidine kinase.
 
 0.450
Swol_1895
KEGG: cpr:CPR_0242 hypothetical protein.
       0.419
Swol_1896
KEGG: dsy:DSY0079 hypothetical protein.
  
    0.418
Swol_0011
KEGG: mta:Moth_0689 putative PAS/PAC sensor protein.
 
 
0.415
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.415
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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