Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_1899KEGG: tte:TTE0061 beta-galactosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (404 aa)    
Predicted Functional Partners:
Swol_1900
KEGG: dps:DP2455 hypothetical protein.
 
     0.633
Swol_0487
KEGG: reu:Reut_B3869 MaoC-like dehydratase.
  
     0.564
Swol_0446
Mg-chelatase subunit ChlD-like protein; KEGG: sth:STH2440 magnesium chelatase.
  
     0.488
Swol_1919
KEGG: tma:TM1852 hypothetical protein.
 
     0.450
Swol_2531
KEGG: tte:TTE2665 hypothetical protein.
  
     0.404
Swol_0445
KEGG: sth:STH2441 putative chelatase.
  
     0.400
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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