Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1900KEGG: dps:DP2455 hypothetical protein. (351 aa)    
Predicted Functional Partners:
Swol_1916
Glycosyltransferase; KEGG: tte:TTE0066 predicted glycosyltransferase.
  
     0.697
Swol_1917
KEGG: tte:TTE0067 hypothetical protein.
  
   
 0.697
Swol_2025
KEGG: dps:DP2454 hypothetical protein.
 
  
 0.693
Swol_1899
KEGG: tte:TTE0061 beta-galactosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.633
Swol_1908
Glycosyltransferases involved in cell wall biogenesis-like protein; KEGG: pca:Pcar_1758 putative glycosyl transferase.
  
  
 0.604
Swol_0722
Hypothetical protein; KEGG: pcr:Pcryo_0621 polysaccharide biosynthesis protein.
  
  
 0.489
Swol_1919
KEGG: tma:TM1852 hypothetical protein.
 
  
 0.486
Swol_1084
Non-ribosomal peptide synthetase modules and related proteins-like protein; KEGG: bld:BLi00402 lichenysin synthetase B; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.468
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
     
 0.403
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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