Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1906KEGG: dsy:DSY4421 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Swol_1905
Hypothetical protein; KEGG: cac:CAC3265 predicted membrane protein.
  
    0.626
Swol_1415
KEGG: bcz:pE33L466_0121 hypothetical protein.
  
    0.506
Swol_2364
KEGG: cac:CAC3186 hypothetical protein.
  
     0.422
Swol_1904
KEGG: cac:CAC0882 predicted membrane protein, hemolysin III homolog.
       0.419
Swol_0320
KEGG: dsy:DSY2102 hypothetical protein.
  
     0.415
Swol_2534
KEGG: chy:CHY_0040 putative ATP-dependent protease La.
  
    0.403
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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