STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1912KEGG: tte:TTE2789 selenocysteine lyase. (382 aa)    
Predicted Functional Partners:
Swol_0665
KEGG: ctc:CTC00757 hypothetical protein.
  
 
 0.802
Swol_0664
KEGG: ctc:CTC00756 ABC transporter ATP-binding protein.
  
  
 0.767
Swol_1887
KEGG: mta:Moth_0124 SirA-like; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.696
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.681
Swol_2429
Cysteine desulfurase; KEGG: dsy:DSY0801 hypothetical protein.
  
  
 
0.558
Swol_1084
Non-ribosomal peptide synthetase modules and related proteins-like protein; KEGG: bld:BLi00402 lichenysin synthetase B; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.498
Swol_1913
KEGG: tte:TTE1454 hypothetical protein.
       0.491
Swol_2089
KEGG: mta:Moth_1442 hypothetical protein.
 
     0.474
Swol_2088
Hypothetical protein; KEGG: mta:Moth_1439 SirA-like; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.471
Swol_0518
KEGG: tde:TDE0239 glycine reductase complex protein GrdD.
  
     0.421
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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