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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1925KEGG: sat:SYN_01370 iron only hydrogenase large subunit. (387 aa)    
Predicted Functional Partners:
Swol_1926
Hypothetical protein; KEGG: sth:STH3209 iron hydrogenase.
 
 
 0.981
Swol_1701
NADH dehydrogenase (quinone); KEGG: det:DET0729 [Fe] hydrogenase, HymB subunit, putative.
  
 
 0.934
Swol_0657
NADH dehydrogenase (quinone); KEGG: tko:TK1613 NADH:ubiquinone oxidoreductase, NADH-binding subunit F.
  
 
 0.907
Swol_1020
KEGG: tte:TTE1073 Biotin synthase and related enzymes.
 
  
 0.785
Swol_0318
KEGG: mta:Moth_1277 small GTP-binding protein domain.
 
   
 0.780
Swol_1022
KEGG: tte:TTE1568 thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.
 
   
 0.752
Swol_1927
KEGG: son:SO3922 formate dehydrogenase, putative.
       0.697
Swol_0785
KEGG: dsy:DSY3969 NADH dehydrogenase I chain G.
  
 
 0.660
Swol_1832
KEGG: mag:amb2921 Fe-S-cluster-containing hydrogenase components 2.
   
 
 0.624
Swol_1019
KEGG: chy:CHY_0731 Fe-hydrogenase, gamma subunit.
 
 
 0.610
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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