STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1955KEGG: ctc:CTC01025 heptaprenyl diphosphate synthase component I. (184 aa)    
Predicted Functional Partners:
Swol_1954
KEGG: dar:Daro_0069 hypothetical protein.
 
    0.976
Swol_0680
KEGG: mta:Moth_1252 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.928
Swol_0968
KEGG: sth:STH190 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.928
Swol_0569
Farnesyl-diphosphate synthase; KEGG: mta:Moth_1513 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.923
Swol_0886
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.900
Swol_1956
Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.819
Swol_1953
Hypothetical protein.
       0.489
Swol_1959
KEGG: cpe:CPE1062 conserved hypothetical protein.
 
     0.466
Swol_1952
KEGG: mac:MA0870 ABC transporter, ATP-binding protein.
       0.464
Swol_1947
KEGG: sth:STH3043 cobalt ABC transporter permease protein.
 
     0.458
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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