STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_1996cAMP-binding protein; KEGG: ppu:PP3250 transporter, putative. (1002 aa)    
Predicted Functional Partners:
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
 
 
 0.934
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.893
Swol_0343
Transmembrane sensor domain-like protein; KEGG: sat:SYN_01481 adenylate cyclase.
 
 0.883
Swol_1997
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
 
     0.874
Swol_2160
KEGG: cac:CAC2592 6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein.
 
  
  0.874
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
 
 
 0.814
Swol_0163
Hypothetical protein; KEGG: mta:Moth_0241 glycosyl hydrolase, BNR repeat.
 
 
   0.808
Swol_2187
KEGG: cac:CAC2776 hypothetical protein.
 
  
 0.793
Swol_0292
KEGG: dsy:DSY0166 hypothetical protein.
 
 
 0.791
Swol_0353
Putative CheA signal transduction histidine kinases; KEGG: mag:amb1466 predicted ATPase.
 
  
 0.789
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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