STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2012ABC-type dipeptide transport system periplasmic component-like protein; KEGG: bld:BLi00894 putative oligopeptide ABC transporter (binding protein) (initiation of sporulation, competence development); RBL02204. (545 aa)    
Predicted Functional Partners:
Swol_0687
uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; KEGG: dsy:DSY2224 hypothetical protein.
     
 0.509
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.485
Swol_2013
Secreted protein; Similar to catalytic domain of murein transglycosylase; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase.
       0.454
Swol_1046
KEGG: mta:Moth_1456 ABC transporter related.
 
  
 0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.442
Swol_0315
KEGG: bbr:BB2796 putative ABC transporter permease protein.
   
 
 0.423
Swol_1071
KEGG: dsy:DSY4874 hypothetical protein.
   
 
 0.423
Swol_1739
KEGG: plt:Plut_1037 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
   
 
 0.423
Swol_2481
KEGG: tde:TDE0375 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.406
Swol_1257
Competence/damage-inducible protein cinA; KEGG: dsy:DSY1955 hypothetical protein; Belongs to the CinA family.
  
  
 0.403
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.