Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_2012ABC-type dipeptide transport system periplasmic component-like protein; KEGG: bld:BLi00894 putative oligopeptide ABC transporter (binding protein) (initiation of sporulation, competence development); RBL02204. (545 aa)    
Predicted Functional Partners:
Swol_1046
KEGG: mta:Moth_1456 ABC transporter related.
 
 0.846
Swol_1047
KEGG: mta:Moth_1455 hypothetical protein.
 
 
 0.746
Swol_0409
KEGG: cpe:CPE2345 probable maltose ABC transportor; Belongs to the ABC transporter superfamily.
  
  
 0.499
Swol_2478
KEGG: pho:PH1350 thiamine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.480
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.466
Swol_0658
KEGG: tko:TK1612 glutamate synthase beta chain-related oxidoreductase, containing 2Fe-2S and 4Fe-4S clusters.
  
  
 0.446
Swol_1225
KEGG: mta:Moth_0912 serine/threonine protein kinase.
  
  
 0.442
Swol_2013
Secreted protein; Similar to catalytic domain of murein transglycosylase; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase.
       0.442
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.417
Swol_0315
KEGG: bbr:BB2796 putative ABC transporter permease protein.
   
 
 0.414
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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