STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2015Integral membrane protein; Probably functions as a manganese efflux pump. (211 aa)    
Predicted Functional Partners:
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.884
Swol_0085
KEGG: tte:TTE2450 hypothetical protein.
  
   
 0.705
Swol_0629
KEGG: mta:Moth_1373 GerA spore germination protein.
  
     0.704
Swol_0764
KEGG: btk:BT9727_3670 hypothetical protein.
  
     0.703
Swol_0093
KEGG: tte:TTE2396 serine phosphatase RsbU, regulator of sigma subunit.
  
     0.685
Swol_1272
KEGG: dsy:DSY2502 hypothetical protein.
  
     0.685
Swol_0948
Conserved hypothetical protein; KEGG: mta:Moth_0855 PRC-barrel.
  
  
 0.672
Swol_0466
KEGG: mta:Moth_1648 hypothetical protein.
  
     0.660
mutM
Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
    0.660
Swol_2013
Secreted protein; Similar to catalytic domain of murein transglycosylase; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase.
       0.613
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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