STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2018Putative transmembrane anti-sigma factor. (384 aa)    
Predicted Functional Partners:
Swol_2019
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sth:STH845 RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.892
Swol_1662
KEGG: cpe:CPE0249 hypothetical protein.
 
    0.776
Swol_2188
Hypothetical protein.
 
     0.774
Swol_0163
Hypothetical protein; KEGG: mta:Moth_0241 glycosyl hydrolase, BNR repeat.
  
     0.771
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
  
     0.771
Swol_2187
KEGG: cac:CAC2776 hypothetical protein.
 
     0.770
Swol_0945
KEGG: ddi:DDB0204067 hypothetical protein.
  
     0.766
Swol_2440
KEGG: ade:Adeh_3520 heat repeat protein.
  
     0.766
Swol_0165
FOG: WD40-like repeat protein; KEGG: mac:MA4287 cell surface protein.
  
     0.762
Swol_1843
Hypothetical protein.
  
     0.762
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.