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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2045KEGG: sth:STH2659 small acid-soluble spore protein. (51 aa)    
Predicted Functional Partners:
Swol_0446
Mg-chelatase subunit ChlD-like protein; KEGG: sth:STH2440 magnesium chelatase.
  
     0.597
Swol_0441
KEGG: chy:CHY_1645 hypothetical protein.
  
     0.542
Swol_2047
KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core.
 
     0.522
Swol_1202
Hypothetical protein; KEGG: cac:CAC3587 DNA replication protein DnaD.
  
     0.511
Swol_1201
KEGG: tte:TTE2774 replicative DNA helicase.
  
    0.494
Swol_2043
KEGG: mta:Moth_1872 DNA polymerase III, alpha subunit.
       0.485
Swol_2044
KEGG: chy:CHY_0379 YbaK/EbsC family protein.
       0.478
Swol_1896
KEGG: dsy:DSY0079 hypothetical protein.
  
     0.449
Swol_2046
KEGG: sth:STH2778 hypothetical protein.
       0.448
Swol_2042
KEGG: chy:CHY_1139 transcription attenuation protein MtrB.
       0.439
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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