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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2047KEGG: mta:Moth_1895 alkylhydroperoxidase AhpD core. (98 aa)    
Predicted Functional Partners:
Swol_0441
KEGG: chy:CHY_1645 hypothetical protein.
  
     0.715
Swol_1919
KEGG: tma:TM1852 hypothetical protein.
  
     0.714
Swol_1779
KEGG: mta:Moth_2052 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.709
Swol_0864
KEGG: dsy:DSY2979 hypothetical protein.
  
     0.703
Swol_0525
KEGG: sat:SYN_01761 pilin assembly protein.
  
     0.698
Swol_0854
KEGG: tte:TTE1437 hypothetical protein.
  
     0.681
Swol_1786
KEGG: mta:Moth_2110 hypothetical protein.
  
     0.671
Swol_0446
Mg-chelatase subunit ChlD-like protein; KEGG: sth:STH2440 magnesium chelatase.
  
     0.637
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.637
Swol_2046
KEGG: sth:STH2778 hypothetical protein.
       0.618
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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