STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2053Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein; KEGG: chy:CHY_1318 sigma-54-dependent transcriptional regulator. (696 aa)    
Predicted Functional Partners:
Swol_0265
KEGG: mta:Moth_0261 sigma-54 (RpoN).
 
   
 0.811
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
   0.688
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
     
 0.632
Swol_0793
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1719 hypothetical protein.
 
     0.588
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.579
Swol_2106
Signal transduction histidine kinase nitrogen specific-like protein; KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator.
 
   
 0.437
Swol_0381
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator.
     
 0.418
ribBA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
  
 
 0.411
Swol_0706
KEGG: bbr:BB0155 probable oxidoreductase.
  
  
 0.406
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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