Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2095KEGG: mba:Mbar_A2266 hypothetical protein. (227 aa)    
Predicted Functional Partners:
Swol_2096
ABC-type Fe3+ transport system periplasmic component-like protein; KEGG: mba:Mbar_A2265 hypothetical protein.
 
     0.944
Swol_2094
KEGG: mac:MA1227 ABC transporter, ATP-binding protein.
 
     0.941
Swol_1683
KEGG: mja:MJ0121 SN-glycerol-3-phosphate transport ATP-binding protein (UgpC).
 
  
 0.828
Swol_2097
KEGG: mta:Moth_1419 periplasmic binding protein.
 
     0.640
Swol_1685
ABC-type Fe3+ transport system periplasmic component-like protein; KEGG: ret:RHE_CH02725 iron(III) ABC transporter, substrate-binding protein.
 
     0.637
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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