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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacAProtein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (288 aa)    
Predicted Functional Partners:
Swol_2102
Conserved hypothetical protein; KEGG: mta:Moth_2247 YbbR-like.
 
  
 0.964
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
   
 
 0.836
Swol_2101
KEGG: ctc:CTC02547 NAD(FAD)-utilizing dehydrogenase.
       0.819
Swol_1915
KEGG: tte:TTE0731 phosphomannomutase.
   
 
 0.725
Swol_2154
KEGG: tte:TTE0731 phosphomannomutase.
   
 
 0.725
mutS2
Recombination and DNA strand exchange inhibitor protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.556
Swol_2104
KEGG: tte:TTE1497 thiamine pyrophosphokinase.
       0.555
argR
Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes.
   
    0.536
Swol_2099
Glutamine--fructose-6-phosphate transaminase (isomerizing); KEGG: ctc:CTC02543 D-fructose-6-phosphate amidotransferase.
     
 0.416
mraZ
KEGG: mta:Moth_0834 protein of unknown function UPF0040; Belongs to the MraZ family.
      
 0.410
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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