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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2105Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (58 aa)    
Predicted Functional Partners:
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.538
Swol_2436
KEGG: det:DET0147 [Fe] hydrogenase, large subunit HymC, putative.
     
 0.536
Swol_0657
NADH dehydrogenase (quinone); KEGG: tko:TK1613 NADH:ubiquinone oxidoreductase, NADH-binding subunit F.
     
 0.519
Swol_0658
KEGG: tko:TK1612 glutamate synthase beta chain-related oxidoreductase, containing 2Fe-2S and 4Fe-4S clusters.
  
  
 0.497
Swol_1925
KEGG: sat:SYN_01370 iron only hydrogenase large subunit.
     
 0.475
Swol_1019
KEGG: chy:CHY_0731 Fe-hydrogenase, gamma subunit.
     
 0.469
Swol_1028
KEGG: dsy:DSY3968 putative formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.465
Swol_0091
KEGG: tte:TTE0064 Formate/nitrite family of transporters.
     
 0.462
Swol_2052
Conserved hypothetical protein; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Catalyzes the oxidation of butanoyl-CoA to crotonyl-CoA. Probably passes the electrons released by this reaction on to electron-transfer flavoproteins (EtfAB) to finally generate hydrogen and/or formate.
  
  
 0.458
Swol_0767
Phosphotransacetylase; KEGG: ctc:CTC01239 phosphate acetyltransferase.
     
 0.444
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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