STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2134KEGG: gme:Gmet_0108 ATPase associated with various cellular activities, AAA_5. (291 aa)    
Predicted Functional Partners:
Swol_2133
KEGG: gme:Gmet_0107 hypothetical protein.
 
    0.898
Swol_0384
KEGG: dsy:DSY4721 hypothetical protein.
  
     0.715
Swol_1933
Conserved hypothetical protein; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Catalyzes the oxidation of butanoyl-CoA to crotonyl-CoA. Probably passes the electrons released by this reaction on to electron-transfer flavoproteins (EtfAB) to finally generate hydrogen and/or formate.
  
     0.707
Swol_2052
Conserved hypothetical protein; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Catalyzes the oxidation of butanoyl-CoA to crotonyl-CoA. Probably passes the electrons released by this reaction on to electron-transfer flavoproteins (EtfAB) to finally generate hydrogen and/or formate.
  
     0.702
Swol_0039
KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
   
 
 0.507
Swol_1357
Arginine decarboxylase; KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
   
 
 0.507
Swol_1144
KEGG: pae:PA2893 acyl-CoA synthase.
 
    0.484
Swol_2135
KEGG: dsy:DSY2269 hypothetical protein.
       0.452
Swol_2071
Putative transcriptional regulator, MerR family; KEGG: nfa:nfa26140 putative transcriptional regulator.
  
     0.434
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.