Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2155KEGG: bha:BH2230 hypothetical protein. (722 aa)    
Predicted Functional Partners:
Swol_2439
KEGG: ade:Adeh_3521 glycosyl transferase, family 2.
 
     0.769
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
 
 
 0.724
Swol_0169
Uncharacterized protein; KEGG: bcz:BCZK1807 possible murein endopeptidase.
  
 
 0.687
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.656
Swol_1874
Transcriptional regulator, CarD family; KEGG: cpe:CPE0259 probable transcriptional regulator.
  
     0.577
Swol_2440
KEGG: ade:Adeh_3520 heat repeat protein.
 
    0.566
Swol_2154
KEGG: tte:TTE0731 phosphomannomutase.
   
 
 0.532
Swol_1943
Hypothetical protein.
  
 
 0.528
Swol_2098
Hypothetical protein.
  
 
 0.528
Swol_2158
KEGG: cac:CAC2523 glycosyltransferase.
 
     0.528
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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