Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swol_2161KEGG: lma:LmjF34.0690 hypothetical protein, conserved. (161 aa)    
Predicted Functional Partners:
Swol_2160
KEGG: cac:CAC2592 6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein.
       0.684
Swol_2158
KEGG: cac:CAC2523 glycosyltransferase.
       0.455
Swol_2159
Hypothetical protein; KEGG: lpl:lp_2143 integral membrane protein.
       0.455
Swol_2157
Dolichyl-phosphate beta-D-mannosyltransferase; KEGG: pfu:PF0058 dolichol monophosphate mannose synthase.
       0.439
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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