Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2168KEGG: cac:CAC0069 predicted iron-binding protein, hemerythrin. (130 aa)    
Predicted Functional Partners:
Swol_2054
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.746
Swol_2363
KEGG: cpe:CPE1014 probable flavoprotein.
  
  
 0.586
Swol_1446
KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon).
 
     0.527
Swol_2167
SPFH domain, Band 7 family protein; KEGG: dsy:DSY4504 hypothetical protein.
       0.462
Swol_2169
YqfW; KEGG: bld:BLi02685 YqfW; Belongs to the 5'(3')-deoxyribonucleotidase family.
       0.427
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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