Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_2169YqfW; KEGG: bld:BLi02685 YqfW; Belongs to the 5'(3')-deoxyribonucleotidase family. (199 aa)    
Predicted Functional Partners:
Swol_1843
Hypothetical protein.
  
     0.575
Swol_0755
KEGG: dsy:DSY3327 hypothetical protein.
  
     0.540
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
     0.540
Swol_0163
Hypothetical protein; KEGG: mta:Moth_0241 glycosyl hydrolase, BNR repeat.
  
     0.523
Swol_1743
KEGG: mba:Mbar_A3737 hypothetical protein.
  
     0.520
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
  
     0.514
Swol_2188
Hypothetical protein.
  
     0.514
Swol_1120
KEGG: bha:BH2230 hypothetical protein.
  
     0.509
Swol_0793
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1719 hypothetical protein.
  
     0.508
Swol_2155
KEGG: bha:BH2230 hypothetical protein.
  
     0.506
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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