Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2176KEGG: dsy:DSY3561 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Swol_2177
Response regulator receiver protein; KEGG: dsy:DSY1212 hypothetical protein.
 
 
 0.976
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
 
 
0.960
Swol_2441
KEGG: tma:TM1655 response regulator DrrA.
 
 
 0.891
Swol_1681
KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
 
 
 0.888
Swol_0951
KEGG: chy:CHY_2047 DNA-binding response regulator.
 
 0.881
Swol_0600
Response regulator receiver modulated diguanylate cyclase; KEGG: gsu:GSU2313 response regulator.
 
 
 0.866
Swol_1456
KEGG: dde:Dde_1576 response regulator receiver domain protein (CheY-like).
 
 
 0.856
Swol_0381
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator.
 
 
0.852
Swol_1327
KEGG: dvu:DVU2770 response regulator.
 
 
 0.795
Swol_1328
PAS/PAC sensor hybrid histidine kinase; KEGG: dsy:DSY3378 hypothetical protein.
 
 
 
0.794
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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