Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2199KEGG: det:DET1087 portal protein, HK97 family, putative. (225 aa)    
Predicted Functional Partners:
Swol_1466
KEGG: bca:BCE0400 phage major capsid protein, HK97 family.
 
 
 0.921
Swol_0149
KEGG: bca:BCE0397 phage terminase, large subunit, putative.
 
   
 0.804
Swol_2215
KEGG: bca:BCE0419 DNA recombinase, putative.
  
   
 0.755
Swol_2055
KEGG: gme:Gmet_2043 protein of unknown function DUF11.
   
   0.622
Swol_1465
KEGG: bcl:ABC1368 hypothetical protein.
 
     0.551
Swol_2200
KEGG: dsy:DSY0817 hypothetical protein.
       0.529
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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