STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2244KEGG: ctc:CTC00804 transcriptional regulator, GntR family. (130 aa)    
Predicted Functional Partners:
Swol_2243
ABC-type multidrug transport system ATPase component-like protein; KEGG: tma:TM0765 putative ABC-2 type transport system ATP-binding protein.
 
  
 0.856
Swol_2242
KEGG: tma:TM0764 putative ABC-2 type transport system permease protein.
  
  
 0.796
Swol_2241
KEGG: mac:MA3383 conserved hypothetical protein; Belongs to the UPF0145 family.
       0.709
Swol_1383
KEGG: bld:BLi02113 putative ABC transporter ATP-binding protein; RBL01943.
 
  
 0.523
Swol_1620
KEGG: mta:Moth_1174 ABC transporter related.
 
  
 0.509
Swol_2245
KEGG: gsu:GSU0792 hypothetical protein.
       0.456
Swol_1389
KEGG: bld:BLi02113 putative ABC transporter ATP-binding protein; RBL01943.
 
  
 0.418
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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