STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2254KEGG: hch:HCH_03415 ATPase of the AAA+ class. (321 aa)    
Predicted Functional Partners:
Swol_2253
KEGG: hch:HCH_03413 subtilisin-like serine protease.
 
    0.952
Swol_1036
KEGG: bld:BLi04311 hypothetical protein.
   
   0.718
Swol_1258
Vesicle-fusing ATPase; KEGG: tte:TTE0122 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
 
    
0.508
Swol_2256
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.508
Swol_2257
Restriction endonuclease S subunits-like protein; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative.
       0.507
Swol_2258
KEGG: chy:CHY_0830 type I restriction-modification system, M subunit.
       0.492
Swol_2255
KEGG: sat:SYN_02061 zinc metalloprotease.
       0.488
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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