Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swol_2256Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1061 aa)    
Predicted Functional Partners:
Swol_2257
Restriction endonuclease S subunits-like protein; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative.
 
  
 0.982
Swol_2258
KEGG: chy:CHY_0830 type I restriction-modification system, M subunit.
 
  
 0.982
Swol_2255
KEGG: sat:SYN_02061 zinc metalloprotease.
 
   
 0.957
Swol_0512
KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).
 
  
 0.776
Swol_0515
KEGG: eba:p2A50 type I restriction-modification system (specificity subunit).
 
  
 0.761
Swol_0513
Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.
 
  
 0.683
Swol_0991
KEGG: gsu:GSU2107 hypothetical protein.
  
  
 0.587
Swol_0994
Hypothetical protein; KEGG: chy:CHY_2653 putative restriction enzyme.
  
  
 0.587
Swol_0997
KEGG: mac:MA2372 hypothetical protein.
  
  
 0.587
Swol_2491
KEGG: dsy:DSY0677 hypothetical protein.
  
  
 0.587
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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