STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2401KEGG: mta:Moth_1579 signal transduction histidine kinase regulating citrate/malate metabolism. (456 aa)    
Predicted Functional Partners:
Swol_1290
KEGG: mta:Moth_0905 accessory gene regulator B.
 
  
  0.941
Swol_2400
Response regulator receiver protein; KEGG: mta:Moth_1621 transcriptional regulator, LytR/AlgR family.
 
  
 0.868
Swol_1961
Hypothetical protein.
  
     0.584
Swol_1966
Hypothetical protein; KEGG: cac:CAC3279 possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats.
  
     0.549
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
       0.497
Swol_1988
KEGG: sth:STH2256 hypothetical protein.
  
     0.490
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
 
  
 0.467
Swol_0298
KEGG: mta:Moth_0188 hypothetical protein.
  
     0.446
Swol_1990
KEGG: mac:MA3039 hypothetical protein.
  
     0.415
Swol_0296
KEGG: gka:GK3208 two-component response regulator.
  
  
 0.411
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.