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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2407KEGG: chy:CHY_1905 HD domain protein. (415 aa)    
Predicted Functional Partners:
Swol_1668
KEGG: dsy:DSY3403 HD-GYP domain protein.
  
     0.770
Swol_0336
KEGG: gme:Gmet_2629 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.673
Swol_2092
Response regulator receiver protein; KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor.
 
 
 0.616
Swol_1622
Response regulator receiver protein; KEGG: lic:LIC20183 histidine kinase sensor protein.
  
 
 0.568
Swol_2406
Peptidase M23B; KEGG: mta:Moth_2401 peptidase M23B.
   
   0.497
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.491
Swol_2435
PAS/PAC domain-like protein; KEGG: sth:STH3300 two-component sensor histidine kinase.
 
 0.445
Swol_0011
KEGG: mta:Moth_0689 putative PAS/PAC sensor protein.
 
 
0.420
Swol_0601
KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator.
  
  
 0.415
Swol_2483
Diguanylate cyclase with PAS/PAC sensor; KEGG: mta:Moth_0689 putative PAS/PAC sensor protein.
 
 
0.411
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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