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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2473KEGG: chy:CHY_2627 radical SAM domain protein. (458 aa)    
Predicted Functional Partners:
Swol_0673
KEGG: tte:TTE0948 hypothetical protein.
  
 
 0.752
Swol_0645
KEGG: chy:CHY_0459 hypothetical protein.
  
     0.501
Swol_2472
Peptidase M23B; KEGG: mta:Moth_2422 peptidase M23B.
  
    0.485
rimO
2-methylthioadenine synthetase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
   
 0.472
Swol_0763
KEGG: mta:Moth_0937 vacuolar-type H+-ATPase subunit H.
  
     0.454
Swol_1005
KEGG: bcz:BCZK3464 possible aluminum resistance protein.
  
     0.445
Swol_0039
KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
 
     0.435
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
   
 0.419
Swol_1357
Arginine decarboxylase; KEGG: mta:Moth_2265 Orn/Lys/Arg decarboxylase, major region.
 
     0.400
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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