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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2480KEGG: tde:TDE0376 ABC transporter, permease protein, putative. (568 aa)    
Predicted Functional Partners:
Swol_2479
KEGG: tde:TDE0386 ABC transporter, periplasmic substrate-binding protein.
 
 
 0.989
Swol_2481
KEGG: tde:TDE0375 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.986
Swol_2476
KEGG: mmp:MMP0108 ABC-type iron(III)-binding periplasmic protein precursor.
 
 
 0.983
Swol_2478
KEGG: pho:PH1350 thiamine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.946
Swol_2477
KEGG: mmp:MMP0109 ABC-type transporter permease protein.
 
  
 
0.941
Swol_2482
KEGG: eba:ebA5293 hypothetical protein.
 
     0.850
Swol_1685
ABC-type Fe3+ transport system periplasmic component-like protein; KEGG: ret:RHE_CH02725 iron(III) ABC transporter, substrate-binding protein.
 
  
 0.705
Swol_2096
ABC-type Fe3+ transport system periplasmic component-like protein; KEGG: mba:Mbar_A2265 hypothetical protein.
 
  
 0.623
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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