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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2536KEGG: dsy:DSY5032 hypothetical protein. (321 aa)    
Predicted Functional Partners:
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.968
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
    0.932
Swol_2537
KEGG: cac:CAC3720 hypothetical protein.
       0.797
Swol_1662
KEGG: cpe:CPE0249 hypothetical protein.
  
     0.763
Swol_0676
KEGG: dsy:DSY2235 hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
     0.762
Swol_1786
KEGG: mta:Moth_2110 hypothetical protein.
  
     0.760
Swol_0458
KEGG: pfa:PF10_0351 hypothetical protein.
  
     0.759
Swol_2534
KEGG: chy:CHY_0040 putative ATP-dependent protease La.
       0.752
Swol_2187
KEGG: cac:CAC2776 hypothetical protein.
  
     0.745
Swol_0059
KEGG: sth:STH1375 hypothetical protein.
  
     0.743
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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