Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swol_2551KEGG: mta:Moth_1136 putative signal transduction protein with CBS domains. (220 aa)    
Predicted Functional Partners:
Swol_2555
KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.645
Swol_2554
KEGG: mta:Moth_2500 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.626
Swol_2553
KEGG: mta:Moth_2499 ABC transporter related.
 
     0.621
Swol_2552
KEGG: gka:GK2976 branched-chain amino acid ABC transporter (ATP-binding protein).
 
     0.619
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.566
Swol_2556
KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein).
 
     0.489
Swol_0976
KEGG: mma:MM0067 hypothetical protein.
  
  
 0.488
Swol_2171
KEGG: sat:SYN_01017 deacetylase family protrein.
  
  
 0.488
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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