STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0378PFAM: Extracellular ligand-binding receptor; KEGG: gme:Gmet_1823 extracellular ligand-binding receptor. (396 aa)    
Predicted Functional Partners:
Sfum_0384
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_2606 branched-chain amino acid ABC tranpsorter, ATP binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.935
Sfum_0385
PFAM: inner-membrane translocator; KEGG: bbr:BB3150 putative ABC-transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.851
Sfum_4070
PFAM: inner-membrane translocator; KEGG: gsu:GSU1733 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.844
Sfum_1680
PFAM: inner-membrane translocator; KEGG: dar:Daro_0367 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.842
Sfum_1679
PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.829
Sfum_4071
PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.828
Sfum_0379
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
    0.645
Sfum_3103
PFAM: inner-membrane translocator; KEGG: dvu:DVU2742 high-affinity branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.558
Sfum_2283
PFAM: inner-membrane translocator; KEGG: tde:TDE2365 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.548
Sfum_0836
PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.531
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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