STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0395Hypothetical protein; KEGG: cac:CAC2488 uncharacterized conserved protein, YTFE family. (163 aa)    
Predicted Functional Partners:
Sfum_2964
Hypothetical protein; KEGG: sat:SYN_00932 coA pyrophosphatase.
  
     0.584
Sfum_3241
KEGG: pca:Pcar_0555 hypothetical protein.
  
     0.579
Sfum_0394
Hypothetical protein.
       0.550
Sfum_4029
Galactose-1-phosphate uridylyltransferase-like; KEGG: afu:AF1331 A. fulgidus predicted coding region AF1331.
  
     0.548
Sfum_1324
KEGG: mth:MTH1477 hypothetical protein.
  
     0.445
Sfum_0396
KEGG: tth:TTC1884 hydrolase (HAD superfamily).
       0.434
Sfum_3269
Cache sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Cache domain protein; KEGG: chy:CHY_1856 sensor histidine kinase.
  
     0.427
Sfum_3444
PFAM: flavin reductase domain protein, FMN-binding; KEGG: mac:MA3965 flavoredoxin.
  
     0.407
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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