STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0533TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: dps:DP1442 related to oligopeptidase. (589 aa)    
Predicted Functional Partners:
Sfum_0660
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gme:Gmet_1943 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
    0.657
Sfum_1378
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.604
Sfum_1788
PFAM: import inner membrane translocase, subunit Tim44; KEGG: gme:Gmet_1927 import inner membrane translocase, subunit Tim44.
  
     0.529
Sfum_0534
PFAM: FAD linked oxidase domain protein; KEGG: gsu:GSU3296 glycolate oxidase subunit GlcD, putative.
       0.512
Sfum_1978
Carboxypeptidase Taq. Metallo peptidase. MEROPS family M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
 
    0.504
Sfum_1235
PFAM: peptidase M16 domain protein; KEGG: gsu:GSU1594 peptidase, M16 family; Belongs to the peptidase M16 family.
 
 
 0.400
Sfum_1952
PFAM: phosphoglucose isomerase (PGI); KEGG: aba:Acid345_2810 transaldolase; Belongs to the GPI family.
 
  
 0.400
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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