STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0737PFAM: UspA domain protein; KEGG: sat:SYN_00314 universal stress protein family. (138 aa)    
Predicted Functional Partners:
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.783
Sfum_0818
PFAM: UspA domain protein; KEGG: gme:Gmet_2678 UspA.
  
     0.729
Sfum_0180
PFAM: UspA domain protein; KEGG: gme:Gmet_2678 UspA.
  
     0.660
Sfum_0352
PFAM: UspA domain protein; KEGG: plt:Plut_1294 universal stress protein family.
  
     0.637
Sfum_0624
PFAM: UspA domain protein; KEGG: mba:Mbar_A2851 universal stress protein.
  
     0.625
Sfum_0806
PFAM: UspA domain protein; KEGG: mja:MJ0531 hypothetical protein.
  
     0.592
Sfum_0739
PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: mac:MA1605 membrane alanine aminopeptidase.
       0.515
Sfum_0736
L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mhu:Mhun_1939 threonine dehydratase.
       0.500
Sfum_0646
PFAM: UspA domain protein; KEGG: mja:MJ0531 hypothetical protein.
  
     0.481
Sfum_0735
KEGG: mbu:Mbur_0639 multisensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
     
 0.464
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
Server load: low (18%) [HD]