STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0795PFAM: Protein of unknown function DUF676, hydrolase domain protein; PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like. (285 aa)    
Predicted Functional Partners:
Sfum_0796
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pfu:PF1777 hydrolase related to 2-haloalkanoic acid dehalogenase.
 
   
 0.832
Sfum_0108
PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1731 long-chain-fatty-acid--CoA ligase.
    
 0.812
rplL
LSU ribosomal protein L12P / LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
   0.802
rpmA
PFAM: ribosomal protein L27; KEGG: dps:DP2591 probable 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.801
rpmG
PFAM: ribosomal protein L33; KEGG: gme:Gmet_0612 hypothetical protein; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.796
rpmB
PFAM: ribosomal protein L28; KEGG: sat:SYN_00885 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.796
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
 
 0.795
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.795
rplQ
PFAM: ribosomal protein L17; KEGG: gme:Gmet_0654 ribosomal protein L17.
    
   0.795
rpsI
PFAM: ribosomal protein S9; KEGG: pca:Pcar_1899 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.795
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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