STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfum_0830PFAM: protein of unknown function DUF490; KEGG: noc:Noc_0371 protein of unknown function DUF490. (1256 aa)    
Predicted Functional Partners:
Sfum_0758
PFAM: surface antigen (D15); KEGG: ade:Adeh_0164 surface antigen variable number.
 
   
 0.767
Sfum_0831
KEGG: gsu:GSU0996 hypothetical protein.
       0.718
Sfum_0832
Hypothetical protein.
       0.664
Sfum_3771
KEGG: sat:SYN_02864 hypothetical cytosolic protein.
  
     0.589
Sfum_0828
KEGG: ade:Adeh_2011 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.550
Sfum_0829
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_0264 alcohol dehydrogenase GroES-like.
       0.550
Sfum_1423
TIGRFAM: MJ0042 family finger-like protein; KEGG: dvu:DVU1589 hypothetical protein.
  
     0.537
Sfum_0415
PFAM: Smr protein/MutS2; KEGG: ade:Adeh_3940 Smr protein/MutS2-like.
  
     0.523
Sfum_0350
PFAM: ROSMUCR transcriptional regulator; KEGG: dde:Dde_0303 transcriptional regulator, MucR family.
  
     0.510
Sfum_0234
KEGG: gme:Gmet_1305 transcriptional regulator, MucR family.
  
     0.508
Your Current Organism:
Syntrophobacter fumaroxidans
NCBI taxonomy Id: 335543
Other names: S. fumaroxidans MPOB, Syntrophobacter fumaroxidans DSM 10017, Syntrophobacter fumaroxidans MPOB, Syntrophobacter fumaroxidans str. MPOB, Syntrophobacter fumaroxidans strain MPOB, Syntrophobacter sp. DSM 10017, syntrophic propionate-oxidizing bacterium DSM 10017
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